network visualization software cytoscape Search Results


r-studio software  (RStudio)
90
RStudio r-studio software
R Studio Software, supplied by RStudio, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/network+visualization+software+cytoscape/pmc07748342-40-6-12?v=RStudio
Average 90 stars, based on 1 article reviews
r-studio software - by Bioz Stars, 2026-08
90/100 stars
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prism v9.1.1.233  (GraphPad Software Inc)
90
GraphPad Software Inc prism v9.1.1.233
Prism V9.1.1.233, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/network+visualization+software+cytoscape/pmc09413091-165-9-8?v=GraphPad+Software+Inc
Average 90 stars, based on 1 article reviews
prism v9.1.1.233 - by Bioz Stars, 2026-08
90/100 stars
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cytoscape software v3.9.1  (Softworks Group Inc)
90
Softworks Group Inc cytoscape software v3.9.1
Cytoscape Software V3.9.1, supplied by Softworks Group Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/network+visualization+software+cytoscape/pmc10400778-72-23-35?v=Softworks+Group+Inc
Average 90 stars, based on 1 article reviews
cytoscape software v3.9.1 - by Bioz Stars, 2026-08
90/100 stars
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cytoscape software  (GitHub Inc)
90
GitHub Inc cytoscape software
Cytoscape Software, supplied by GitHub Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/network+visualization+software+cytoscape/pm38062817-111-19-24?v=GitHub+Inc
Average 90 stars, based on 1 article reviews
cytoscape software - by Bioz Stars, 2026-08
90/100 stars
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cytoscape software  (Broad Institute Inc)
90
Broad Institute Inc cytoscape software
Cytoscape Software, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/network+visualization+software+cytoscape/pm35449056-68-10-17?v=Broad+Institute+Inc
Average 90 stars, based on 1 article reviews
cytoscape software - by Bioz Stars, 2026-08
90/100 stars
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cytoscape 3.4.0 software  (AllegroViva Corporation)
90
AllegroViva Corporation cytoscape 3.4.0 software
Cytoscape 3.4.0 Software, supplied by AllegroViva Corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/network+visualization+software+cytoscape/pm28925702-195-4-13?v=AllegroViva+Corporation
Average 90 stars, based on 1 article reviews
cytoscape 3.4.0 software - by Bioz Stars, 2026-08
90/100 stars
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cytoscape application  (Bicon LLC)
90
Bicon LLC cytoscape application
Cytoscape Application, supplied by Bicon LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/network+visualization+software+cytoscape/pmc11417901-455-2-30?v=Bicon+LLC
Average 90 stars, based on 1 article reviews
cytoscape application - by Bioz Stars, 2026-08
90/100 stars
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cytoscape  (GeneGo Inc)
90
GeneGo Inc cytoscape
Cytoscape, supplied by GeneGo Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/network+visualization+software+cytoscape/10__2147_slash_copd__s61347-14-23-25?v=GeneGo+Inc
Average 90 stars, based on 1 article reviews
cytoscape - by Bioz Stars, 2026-08
90/100 stars
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cluego plugin of cytoscape  (BioCarta)
90
BioCarta cluego plugin of cytoscape
(A) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERα cells. ClueGO plugin in <t>Cytoscape</t> was used to identify preferentially regulated REACTOME terms from Biocarta. (B) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERα plus ERβ cells. (C) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERβ cells.
Cluego Plugin Of Cytoscape, supplied by BioCarta, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/network+visualization+software+cytoscape/pmc04193135-74-6-13?v=BioCarta
Average 90 stars, based on 1 article reviews
cluego plugin of cytoscape - by Bioz Stars, 2026-08
90/100 stars
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cytoscape  (Accelrys)
86
Accelrys cytoscape
(A) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERα cells. ClueGO plugin in <t>Cytoscape</t> was used to identify preferentially regulated REACTOME terms from Biocarta. (B) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERα plus ERβ cells. (C) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERβ cells.
Cytoscape, supplied by Accelrys, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/network+visualization+software+cytoscape/10__33394_slash_bioscientist__v12i1__9592-48-23-24?v=Accelrys
Average 86 stars, based on 1 article reviews
cytoscape - by Bioz Stars, 2026-08
86/100 stars
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cytoscape app  (Bicon LLC)
90
Bicon LLC cytoscape app
(A) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERα cells. ClueGO plugin in <t>Cytoscape</t> was used to identify preferentially regulated REACTOME terms from Biocarta. (B) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERα plus ERβ cells. (C) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERβ cells.
Cytoscape App, supplied by Bicon LLC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/network+visualization+software+cytoscape/pmc08617287-49-23-44?v=Bicon+LLC
Average 90 stars, based on 1 article reviews
cytoscape app - by Bioz Stars, 2026-08
90/100 stars
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cytoscape  (FOSS GmbH)
90
FOSS GmbH cytoscape
(A) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERα cells. ClueGO plugin in <t>Cytoscape</t> was used to identify preferentially regulated REACTOME terms from Biocarta. (B) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERα plus ERβ cells. (C) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERβ cells.
Cytoscape, supplied by FOSS GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/network+visualization+software+cytoscape/pmc04619910-76-13-9?v=FOSS+GmbH
Average 90 stars, based on 1 article reviews
cytoscape - by Bioz Stars, 2026-08
90/100 stars
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Image Search Results


(A) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERα cells. ClueGO plugin in Cytoscape was used to identify preferentially regulated REACTOME terms from Biocarta. (B) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERα plus ERβ cells. (C) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERβ cells.

Journal: Nuclear Receptor Signaling

Article Title: Transcriptomic analysis identifies gene networks regulated by estrogen receptor α (ERα) and ERβ that control distinct effects of different botanical estrogens

doi: 10.1621/nrs.12001

Figure Lengend Snippet: (A) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERα cells. ClueGO plugin in Cytoscape was used to identify preferentially regulated REACTOME terms from Biocarta. (B) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERα plus ERβ cells. (C) Clustering of gene ontologies that were preferentially regulated by BEs vs. E2 in ERβ cells.

Article Snippet: We then used CLUEGO plugin of Cytoscape [ ] with REACTOME information from Biocarta.

Techniques: